Robin R Gutell : rechercher sur Z-Library

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1

Ten lessons with Carl Woese about RNA and comparative analysis

Gutell, Robin R

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 3.28 MB

english, 2014

2

Morphological, Molecular, and Phylogenetic Characterization of Nosema ceranae, a Microsporidian Parasite Isolated from the European Honey Bee, Apis mellifera

YANPING P. CHEN, JAY D. EVANS, CHARLES MURPHY, ROBIN GUTELL, MICHAEL ZUKER, DAWN GUNDENSEN-RINDAL, JEFF S. PETTIS

Journal:

Journal of Eukaryotic Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 1.20 MB

english, 2009

3

Phylogeny of the Chlamydomonadales (Chlorophyceae): A Comparison of Ribosomal RNA Gene Sequences from the Nucleus and the Chloroplast

Mark A. Buchheim, Claude Lemieux, Christian Otis, Robin R. Gutell, Russell L. Chapman, Monique Turmel

Journal:

Molecular Phylogenetics and Evolution

Année:

1996

Langue:

english

Fichier:

PDF, 234 KB

english, 1996

4

Phylogenetic Analysis of Molluscan Mitochondrial LSU rDNA Sequences and Secondary Structures

Charles Lydeard, Wallace E. Holznagel, Murray N. Schnare, Robin R. Gutell

Journal:

Molecular Phylogenetics and Evolution

Année:

2000

Langue:

english

Fichier:

PDF, 415 KB

english, 2000

5

Networks of interactions in the secondary and tertiary structure of ribosomal RNA

Chang-Yong Lee, Jung C. Lee, Robin R. Gutell

Journal:

Physica A: Statistical Mechanics and its Applications

Année:

2007

Langue:

english

Fichier:

PDF, 206 KB

english, 2007

6

Phylogenetic relationships among 28 spirotrichous ciliates documented by rDNA

Elizabeth A. Hewitt, Kirsten M. Müller, Jamie Cannone, Daniel J. Hogan, Robin Gutell, David M. Prescott

Journal:

Molecular Phylogenetics and Evolution

Année:

2003

Langue:

english

Fichier:

PDF, 233 KB

english, 2003

7

ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae

Leslie R. Goertzen, Jamie J. Cannone, Robin R. Gutell, Robert K. Jansen

Journal:

Molecular Phylogenetics and Evolution

Année:

2003

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2003

8

A PROPOSAL FOR A NEW RED ALGAL ORDER, THE THOREALES1

Kirsten M. Müller, Alison R. Sherwood, Curt M. Pueschel, Robin R. Gutell, Robert G. Sheath

Journal:

Journal of Phycology

Année:

2002

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2002

9

The nucleotide sequence of the entire ribosomal DNA operon and the structure of the large subunit rRNA ofGiardia muris

Harry Keulen, Robin R. Gutell, Scott R. Campbell, Stanley L. Erlandsen, Edward L. Jarroll

Journal:

Journal of Molecular Evolution

Année:

1992

Langue:

english

Fichier:

PDF, 1.04 MB

english, 1992

10

Partial nucleotide sequence of a single ribosomal RNA coding region and secondary structure of the large subunit 25 s rRNA ofCandida albicans

Thyagarajan Srikantha, Robin R. Gutell, Brian Morrow, David R. Soll

Journal:

Current Genetics

Année:

1994

Langue:

english

Fichier:

PDF, 787 KB

english, 1994

11

Group I intron lateral transfer between red and brown algal ribosomal RNA

Debashish Bhattacharya, Jamie J. Cannone, Robin R. Gutell

Journal:

Current Genetics

Année:

2001

Langue:

english

Fichier:

PDF, 275 KB

english, 2001

12

Placement of attine ant-associatedPseudonocardiain a globalPseudonocardiaphylogeny (Pseudonocardiaceae, Actinomycetales): a test of two symbiont-association models

Ulrich G. Mueller, Heather Ishak, Jung C. Lee, Ruchira Sen, Robin R. Gutell

Journal:

Antonie van Leeuwenhoek

Année:

2010

Langue:

english

Fichier:

PDF, 764 KB

english, 2010

13

Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae)

David R. Maddison, Wendy Moore, Michael D. Baker, Tana M. Ellis, Karen A. Ober, Jamie J Cannone, Robin R. Gutell

Journal:

Zoologica Scripta

Année:

2009

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2009

14

EVIDENCE FOR LATERAL TRANSFER OF AN IE INTRON BETWEEN FUNGAL AND RED ALGAL SMALL SUBUNIT RRNA GENES

Kirsten M. Müller, Darlene W. Ellenor, Alison R. Sherwood, Robert G. Sheath, Jamie J. Cannone, Robin R. Gutell

Journal:

Journal of Phycology

Année:

2005

Langue:

english

Fichier:

PDF, 459 KB

english, 2005

15

THE EVOLUTION OF ELONGATE SHAPE IN DIATOMS

Andrew J. Alverson, Jamie J. Cannone, Robin R. Gutell, Edward C. Theriot

Journal:

Journal of Phycology

Année:

2006

Langue:

english

Fichier:

PDF, 898 KB

english, 2006

16

Representation of the secondary and tertiary structure of group I introns

Cech, Thomas R., Damberger, Simon H., Gutell, Robin R.

Journal:

Natural Structural Biology

Année:

1994

Fichier:

PDF, 582 KB

1994

17

Secondary structure model for 23S ribosomal RNA

Noller, Harry F., Kop, JoAnn, Wheaton, Virginia, Brosius, Jürgen, Gutell, Robin R., Kopylov, Alexei M., Dohme, Ferdinand, Herr, Winship, Stahl, David A., Gupta, Ramesh

Journal:

Nucleic Acids Research

Année:

1981

Langue:

english

Fichier:

PDF, 1.62 MB

english, 1981

18

Studies on the structure and function of 16S ribosomal RNA using structure-specific chemical probes

Harry F. Noller, Barbara J. Van Stolk, Danesh Moazed, Stephen Douthwaite, Robin R. Gutell

Journal:

Journal of Biosciences

Année:

1985

Langue:

english

Fichier:

PDF, 1.28 MB

english, 1985

19

Characterization of the rDNA unit and sequence analysis of the small subunit rRNA and 5.8S rRNA genes from Tritrichomonas foetus

Debopam Chakrabarti, John B. Dame, Robin R. Gutell, Charles A. Yowell

Journal:

Molecular and Biochemical Parasitology

Année:

1992

Langue:

english

Fichier:

PDF, 849 KB

english, 1992

20

Structure of the Mammalian 80S Ribosome at 8.7 Å Resolution

Preethi Chandramouli, Maya Topf, Jean-François Ménétret, Narayanan Eswar, Jamie J. Cannone, Robin R. Gutell, Andrej Sali, Christopher W. Akey

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 5.13 MB

english, 2008

21

The accuracy of ribosomal RNA comparative structure models

Robin R Gutell, Jung C Lee, Jamie J Cannone

Journal:

Current Opinion in Structural Biology

Année:

2002

Langue:

english

Fichier:

PDF, 1013 KB

english, 2002

22

An analysis of large rRNA sequences folded by a thermodynamic method

Dana S. Fields, Robin R. Gutell

Journal:

Folding and Design

Année:

1996

Langue:

english

Fichier:

PDF, 114 KB

english, 1996

23

Are red algae plants?

MARK A. RAGAN, ROBIN R. GUTELL

Journal:

Botanical Journal of the Linnean Society

Année:

1995

Langue:

english

Fichier:

PDF, 1.79 MB

english, 1995

24

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction

Kishore J Doshi, Jamie J Cannone, Christian W Cobaugh, Robin R Gutell

Journal:

BMC Bioinformatics

Année:

2004

Langue:

english

Fichier:

PDF, 1.33 MB

english, 2004

25

The exon context and distribution of Euascomycetes rRNA spliceosomal introns

Debashish Bhattacharya, Dawn Simon, Jian Huang, Jamie J Cannone, Robin R Gutell

Journal:

BMC Evolutionary Biology

Année:

2003

Langue:

english

Fichier:

PDF, 630 KB

english, 2003

26

Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes

Coren A Milbury, Jung C Lee, Jamie J Cannone, Patrick M Gaffney, Robin R Gutell

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 2.22 MB

english, 2010

27

A preliminary investigation of the order Bangiales (Bangiophycidae, Rhodophyta) based on sequences of nuclear small-subunit ribosomal RNA genes

Mariana C. Oliveira, Joelius Kurniawan, Carolyn J. Bird, Ellen L. Rice, Colleen A. Murphy, Rama K. Singh, Robin R. Gutell, Mark A. Ragan

Journal:

Phycological Research

Année:

1995

Fichier:

PDF, 1.39 MB

1995

28

Analysis of the Chloroplast Large Subunit Ribosomal RNA Gene from 17 Chlamydomonas Taxa: Three Internal Transcribed Spacers and 12 Group I Intron Insertion Sites

Monique Turmel, Robin R. Gutell, Jean-Patrick Mercier, Christian Otis, Claude Lemieux

Journal:

Journal of Molecular Biology

Année:

1993

Fichier:

PDF, 1.27 MB

1993

29

A major family of motifs involving G ? A mismatches in ribosomal RNA

Daniel Gautheret, Danielle Konings, Robin R. Gutell

Journal:

Journal of Molecular Biology

Année:

1994

Fichier:

PDF, 403 KB

1994

30

Identification of Base-triples in RNA using Comparative Sequence Analysis

Daniel Gautheret, Simon H. Damberger, Robin R. Gutell

Journal:

Journal of Molecular Biology

Année:

1995

Langue:

english

Fichier:

PDF, 797 KB

english, 1995

31

Comprehensive Comparison of Structural Characteristics in Eukaryotic Cytoplasmic Large Subunit (23 S-like) Ribosomal RNA

Murray N Schnare, Simon H Damberger, Michael W Gray, Robin R Gutell

Journal:

Journal of Molecular Biology

Année:

1996

Langue:

english

Fichier:

PDF, 1.31 MB

english, 1996

32

Assessing the reliability of RNA folding using statistical mechanics

Martijn Huynen, Robin Gutell, Danielle Konings

Journal:

Journal of Molecular Biology

Année:

1997

Langue:

english

Fichier:

PDF, 265 KB

english, 1997

33

Regulation and trafficking of three distinct 18 S ribosomal RNAs during development of the malaria parasite

Jun Li, Robin R Gutell, Simon H Damberger, Robert A Wirtz, Jessica C Kissinger, M.John Rogers, Jetsumon Sattabongkot, Thomas F McCutchan

Journal:

Journal of Molecular Biology

Année:

1997

Langue:

english

Fichier:

PDF, 1.76 MB

english, 1997

34

Predicting U-turns in Ribosomal RNA with Comparative Sequence Analysis

Robin R. Gutell, Jamie J. Cannone, Danielle Konings, Daniel Gautheret

Journal:

Journal of Molecular Biology

Année:

2000

Langue:

english

Fichier:

PDF, 627 KB

english, 2000

35

Function of tyrosyl-tRNA synthetase in splicing group I introns: an induced-fit model for binding to the P4-P6 domain based on analysis of mutations at the junction of the P4-P6 stacked helices

Xin Chen, Robin R. Gutell, Alan M. Lambowitz

Journal:

Journal of Molecular Biology

Année:

2000

Langue:

english

Fichier:

PDF, 811 KB

english, 2000

36

: A:A and A:G base-pairs at the ends of 16 s and 23 s rRNA helices

Tricia Elgavish, Jamie J. Cannone, Jung C. Lee, Stephen C. Harvey, Robin R. Gutell

Journal:

Journal of Molecular Biology

Année:

2001

Langue:

english

Fichier:

PDF, 653 KB

english, 2001

37

Complete sequences and organization of the rrnA operon from Campylobacter jejuni TGH9011 (ATCC43431)

Nam W. Kim, Robin R. Gutell, Voon L. Chan

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 815 KB

english, 1995

38

Characterization of a flatworm ribosomal RNA-encoding gene: promoter sequence and small subunit rRNA secondary structure

Marina Picón, Robin R. Gutell, Ricardo Ehrlich, Arnaldo Zaha

Journal:

Année:

1996

Langue:

english

Fichier:

PDF, 766 KB

english, 1996

39

Diversity of Base-pair Conformations and their Occurrence in rRNA Structure and RNA Structural Motifs

Jung C. Lee, Robin R. Gutell

Journal:

Journal of Molecular Biology

Année:

2004

Langue:

english

Fichier:

PDF, 1.30 MB

english, 2004

40

A Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome

Jason A. Mears, Manjuli R. Sharma, Robin R. Gutell, Amanda S. McCook, Paul E. Richardson, Thomas R. Caulfield, Rajendra K. Agrawal, Stephen C. Harvey

Journal:

Journal of Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 2.61 MB

english, 2006

41

The UAA/GAN Internal Loop Motif: A New RNA Structural Element that Forms a Cross-strand AAA Stack and Long-range Tertiary Interactions

Jung C. Lee, Robin R. Gutell, Rick Russell

Journal:

Journal of Molecular Biology

Année:

2006

Langue:

english

Fichier:

PDF, 957 KB

english, 2006

42

Correlation of RNA Secondary Structure Statistics with Thermodynamic Stability and Applications to Folding

Johnny C. Wu, David P. Gardner, Stuart Ozer, Robin R. Gutell, Pengyu Ren

Journal:

Journal of Molecular Biology

Année:

2009

Langue:

english

Fichier:

PDF, 575 KB

english, 2009

43

Statistical Potentials for Hairpin and Internal Loops Improve the Accuracy of the Predicted RNA Structure

David P. Gardner, Pengyu Ren, Stuart Ozer, Robin R. Gutell

Journal:

Journal of Molecular Biology

Année:

2011

Langue:

english

Fichier:

PDF, 699 KB

english, 2011

44

Modeling a Minimal Ribosome Based on Comparative Sequence Analysis

Jason A. Mears, Jamie J. Cannone, Scott M. Stagg, Robin R. Gutell, Rajendra K. Agrawal, Stephen C. Harvey

Journal:

Journal of Molecular Biology

Année:

2002

Langue:

english

Fichier:

PDF, 996 KB

english, 2002

45

Distribution of rRNA Introns in the Three-dimensional Structure of the Ribosome

Scott A. Jackson, Jamie J. Cannone, Jung C. Lee, Robin R. Gutell, Sarah A. Woodson

Journal:

Journal of Molecular Biology

Année:

2002

Langue:

english

Fichier:

PDF, 3.15 MB

english, 2002

46

The Lonepair Triloop: A New Motif in RNA Structure

Jung C Lee, Jamie J Cannone, Robin R Gutell

Journal:

Journal of Molecular Biology

Année:

2003

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2003

47

Transcriptional mapping of plasmid pKK3535: Quantitation of the effect of guanosine tetraphosphate on binding to the rrnB promoters and a λ promoter with sequence homologies to the CII binding region

Robert E. Kingston, Robin R. Gutell, Alice R. Taylor, Michael J. Chamberlin

Journal:

Journal of Molecular Biology

Année:

1981

Langue:

english

Fichier:

PDF, 3.36 MB

english, 1981

48

Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E. coli

Jürgen Brosius, Axel Ullrich, Mary Alice Raker, Alane Gray, Thomas J. Dull, Robin R. Gutell, Harry F. Noller

Journal:

Année:

1981

Langue:

english

Fichier:

PDF, 657 KB

english, 1981

49

The origin and evolution of the ribosome

Temple F Smith, Jung C Lee, Robin R Gutell, Hyman Hartman

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 2.59 MB

english, 2008

50

Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems

Shang, Lei, Gardner, David P, Xu, Weijia, Cannone, Jamie J, Miranker, Daniel P, Ozer, Stuart, Gutell, Robin R

Journal:

BMC Systems Biology

Année:

2013

Langue:

english

Fichier:

PDF, 2.90 MB

english, 2013